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Background reading · Technology

The invisible workers: how fish waste becomes plant food

The nitrogen cycle inside an aquaponics system, the bacteria that power it, and the water tests that let you see what you can't see.

Aquaponics joins two things: aquaculture (raising fish) and hydroponics (growing plants in water instead of soil). The magic happens in between, done by living things too small to see.

The loop

  • Ammonia: fish breathe out and pee out ammonia through their gills and waste. In a closed tank it builds up and becomes poisonous. - Nitrite: one group of bacteria turns ammonia into nitrite. Nitrite is poisonous too. - Nitrate: a second group of bacteria turns nitrite into nitrate, which fish cope with and plants love. - Plants: roots take up the nitrate to grow leaves, and the cleaner water flows back to the fish.
  • Where the bacteria live

    The helpful bacteria don't float around in the water. They live as a thin slimy film on every surface: clay balls, gravel, pipes and tank walls. More surface means more bacteria and a system that can handle more fish waste. That's why grow beds are filled with lots of small bumpy balls.

    Be patient

    A new system can't be filled with fish straight away. It takes about four to eight weeks for enough bacteria to grow. This is called cycling. Rush it and ammonia builds up with nothing to clean it.

    Temperature and pH

    Bacteria work fastest in warm water and slow right down in the cold. In a New Zealand winter an unheated system does much less. pH tells you how acidic the water is. As the bacteria work, pH slowly drops, so it needs watching. Most aquaponics growers aim for pH close to 7.

    Reading the invisible

    You can't see bacteria working or nitrate moving into roots. But you can see the signs: fish gulping at the surface when ammonia rises, water turning cloudy, older leaves turning yellow when nitrogen runs short. Test kits turn the invisible into numbers you can graph.

    Sources and further reading

    Written for Kōkiri Learn students in our own words. Check facts against the sources.

    Used in: Grow It: Aquaponics and Sustainable Systems